Description

Calculate how mapped reads are distributed over genomic features

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bam:file

the alignment in bam format

*.{bam}

bed:file

a bed file for the reference gene model

*.{bed}

Output

name:type
description
pattern

txt

meta:file

the read distribution report

*.read_distribution.txt

*.read_distribution.txt:file

the read distribution report

*.read_distribution.txt

versions

versions.yml:file

File containing software versions

versions.yml

Tools

rseqc
GPL-3.0-or-later

RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.