Description

Add intron features to gtf/gff file without intron features.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

gff:file

Input gtf/gff file

*.{gff,gff3,gtf}

config:file

Optional input agat config file

*.{yaml,yml}

Output

name:type
description
pattern

gff

meta:file

Output gff3 file with introns

*.gff

${output}:file

Output gff3 file with introns

*.gff

versions

versions.yml:file

File containing software versions

versions.yml

Tools

agat
GPL v3

Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.